/* Nav + user menu helpers */
.group:hover .group-hover\:flex {
  display: flex !important;
}

.group:hover .group-hover\:block {
  display: block !important;
}

.user-menu {
  position: relative;
  display: inline-flex;
  align-items: center;
  gap: 0.5rem;
}

.user-menu .username {
  color: #e5e7eb;
  font-size: 1.25rem;
  font-weight: 500;
  line-height: 1.5;
  text-decoration: none;
}

.user-menu .username:hover {
  color: #ffffff;
}

.user-menu .chev {
  width: 0.95rem;
  height: 0.95rem;
  opacity: 0.8;
  transition: transform 0.2s ease;
}

.user-menu:hover .chev {
  transform: rotate(180deg);
}

.user-menu .menu {
  display: none;
  position: absolute;
  right: 0;
  top: 100%;
  min-width: 11rem;
  background: #111827;
  color: #e5e7eb;
  border-radius: 0.5rem;
  box-shadow: 0 10px 15px rgba(0, 0, 0, 0.25);
  border: 1px solid #1f2937;
  z-index: 9999;
}

.user-menu:hover .menu,
.user-menu:focus-within .menu {
  display: block;
}

.user-menu .menu a {
  display: block;
  padding: 0.5rem 0.75rem;
  color: inherit;
  text-decoration: none;
  white-space: nowrap;
}

.user-menu .menu a:hover {
  background: #1f2937;
}

.login-btn {
  margin-left: 1.5rem;
  padding: 0.5rem 1rem;
  border-radius: 0.375rem;
  background: #2563eb;
  color: white;
  font-size: 1rem;
  font-weight: 600;
  text-decoration: none;
  transition: background 0.15s ease;
}

.login-btn:hover {
  background: #1d4ed8;
}

.avatar-dot {
  height: 2rem;
  width: 2rem;
  display: flex;
  align-items: center;
  justify-content: center;
  font-size: 1.25rem;
  background: transparent;
}

/* Setup-needed fallback page (db.php) */
.setup-needed {
  font-family: -apple-system, BlinkMacSystemFont, "Segoe UI", sans-serif;
  background: #f6f7fb;
  color: #1f2937;
  margin: 0;
}

.setup-needed .wrap {
  max-width: 720px;
  margin: 10vh auto;
  padding: 24px;
}

.setup-needed .card {
  background: #fff;
  border: 1px solid #e5e7eb;
  border-radius: 12px;
  padding: 24px;
  box-shadow: 0 10px 30px rgba(31, 41, 55, 0.08);
}

.setup-needed h1 {
  margin: 0 0 8px;
  font-size: 22px;
}

.setup-needed p {
  margin: 8px 0;
  line-height: 1.5;
}

.setup-needed code {
  background: #f3f4f6;
  padding: 2px 6px;
  border-radius: 6px;
}

/* BLAST page */
.page-blast .choice-group {
  display: flex;
  flex-wrap: wrap;
  column-gap: 0.75rem;
  row-gap: 1rem;
}

.page-blast .choice-group label {
  display: flex;
  align-items: center;
  gap: 0.5rem;
}

.page-blast section {
  margin-bottom: 2rem;
}

.page-blast section h2 {
  margin-bottom: 0.75rem;
}

.page-blast section input[type="text"],
.page-blast section select,
.page-blast section textarea {
  margin-bottom: 0.75rem;
}

.page-blast .question-button {
  margin-left: 0.25rem;
  border-radius: 9999px;
  width: 1rem;
  height: 1rem;
  display: inline-flex;
  align-items: center;
  justify-content: center;
  font-size: 0.75rem;
  font-weight: bold;
  background: #fff;
  color: #111827;
  border: 1px solid #d1d5db;
  box-shadow: 0 1px 2px rgba(0, 0, 0, 0.05);
}

.page-blast .question-button.bg-gray-900 {
  background: #111827;
  color: #fff;
  border-color: #111827;
}

.page-blast .caret-button {
  cursor: pointer;
  display: inline-block;
  width: 1.1rem;
}

.page-blast .caret-button::before {
  content: "\25B6";
  display: inline-block;
  transition: transform 0.2s ease;
}

.page-blast .caret-button.expanded::before {
  transform: rotate(90deg);
}

.page-blast .tree ul {
  margin-left: 1rem;
}

.page-blast .tree li {
  padding: 0.3rem 0;
}

.page-blast .tooltip {
  background: #fff;
  color: #111;
  border-radius: 0.5rem;
  box-shadow: 0 10px 15px -3px rgba(0, 0, 0, 0.1),
    0 4px 6px -4px rgba(0, 0, 0, 0.1);
  padding: 0.75rem;
  max-width: 24rem;
  border: 1px solid rgba(0, 0, 0, 0.06);
}

.page-blast .tooltip[data-popper-placement^="top"] > [data-popper-arrow] {
  bottom: -5px;
}

.page-blast .tooltip[data-popper-placement^="bottom"] > [data-popper-arrow] {
  top: -5px;
}

.page-blast .tooltip [data-popper-arrow] {
  position: absolute;
  width: 10px;
  height: 10px;
  transform: rotate(45deg);
  background: #fff;
  border-left: 1px solid rgba(0, 0, 0, 0.06);
  border-top: 1px solid rgba(0, 0, 0, 0.06);
}

.page-blast .flex.gap-4 > label {
  margin-right: 1.5rem;
}

.page-blast .controls-pipes {
  margin-top: 0.25rem;
  margin-bottom: 0.5rem;
  gap: 1rem;
}

.page-blast .controls-pipes > .opacity-50 {
  margin: 0 0.5rem;
}

.page-blast .controls-pipes > .link {
  padding: 0.125rem 0;
}

.page-blast #species-count {
  margin-left: 1rem;
  font-weight: 500;
  color: #d1d5db;
}

/* Force two-column layout for the Job Details list */
.page-run-blast #summaryPanel .job-details {
  display: grid !important;
  grid-template-columns: max-content 1fr !important;
  column-gap: 1.5rem;
  row-gap: 0.5rem;
  align-items: start;
}

/* Make labels stand out and align right */
.page-run-blast #summaryPanel .job-details dt {
  margin: 0; /* kill UA default */
  text-align: right;
  white-space: nowrap;
  font-weight: 600;
  color: #d1d5db !important; /* Tailwind gray-300 */
}

/* Values: full-strength text color and no default margins */
.page-run-blast #summaryPanel .job-details dd {
  margin: 0; /* kill UA default */
  color: #f3f4f6 !important; /* Tailwind gray-100 */
}

/* Search + Mutation Plot shared table styles */
.page-search th,
.page-mutation-plot th {
  white-space: normal;
  word-wrap: break-word;
  max-width: 150px;
}

.page-search #results-scroll-top,
.page-mutation-plot #results-scroll-top {
  height: 12px;
  overflow-x: auto;
  overflow-y: hidden;
  margin-bottom: 0.25rem;
}

.page-search #results-scroll-top > div,
.page-mutation-plot #results-scroll-top > div {
  height: 1px;
}

.page-search #results a,
.page-mutation-plot #results a {
  color: #3b82f6 !important;
  text-decoration: underline;
}

.page-search #results a:hover,
.page-mutation-plot #results a:hover {
  color: #60a5fa;
}

.page-search #speciesFilter,
.page-mutation-plot #speciesFilter {
  display: block;
  width: 100%;
  max-width: 100%;
  white-space: normal;
  word-wrap: break-word;
  line-height: 1.2rem;
  text-overflow: ellipsis;
}

.page-search #speciesFilter option,
.page-mutation-plot #speciesFilter option {
  text-overflow: ellipsis;
  white-space: normal;
  word-wrap: break-word;
}

/* Mutation Plot dropdown tweaks */
.page-mutation-plot details.dropdown {
  position: relative;
}

.page-mutation-plot details.dropdown > .dropdown-content {
  display: none;
  position: absolute;
  right: 0;
  top: calc(100% + 0.25rem);
  z-index: 99999;
  pointer-events: auto;
}

.page-mutation-plot details.dropdown[open] > .dropdown-content {
  display: block;
}

.page-mutation-plot details.dropdown > summary {
  list-style: none;
  cursor: pointer;
}

.page-mutation-plot details.dropdown > summary::-webkit-details-marker {
  display: none;
}

.page-mutation-plot details.dropdown .dropdown-content li button {
  white-space: nowrap;
}

/* BLAST results (run_blast.php) */
.page-run-blast th.sort {
  cursor: pointer;
}

.page-run-blast th.sort .arrow {
  display: inline-block;
  width: 0.8em;
}

.page-run-blast .card {
  border-radius: 0.75rem;
  background: #111827;
  color: #f9fafb;
  border: 1px solid #1f2937;
}

.page-run-blast .table {
  width: 100%;
  border-collapse: collapse;
  color: #f9fafb;
}

.page-run-blast .table th,
.page-run-blast .table td {
  padding: 0.4rem 0.5rem;
  border-bottom: 1px solid #374151;
}

.page-run-blast .table thead th {
  background: #1f2937;
  color: #f9fafb;
}

.page-run-blast .table tbody tr:hover {
  background: #374151;
}

.page-run-blast .dl-grid {
  display: grid;
  grid-template-columns: 12rem 1fr;
  gap: 0.5rem 1.5rem;
}

.page-run-blast .dl-grid dt {
  color: #9ca3af;
}

.page-run-blast .dl-grid dd {
  color: #e5e7eb;
}

.page-run-blast pre.wrap {
  white-space: pre-wrap;
  word-break: break-all;
}

.page-run-blast .disclosure-btn {
  display: flex;
  align-items: center;
  gap: 0.5rem;
  padding: 0.5rem 0.75rem;
  border-radius: 0.5rem;
  border: 1px solid #1f2937;
  background: #0b0b0b;
  color: #f3f4f6;
}

.page-run-blast .disclosure-btn:hover {
  background: #111827;
}

.page-run-blast .chevron {
  display: inline-block;
  transition: transform 0.2s ease;
}

.page-run-blast [aria-expanded="true"] .chevron {
  transform: rotate(90deg);
}

.page-run-blast .disclosure-panel {
  display: none;
}

.page-run-blast .disclosure-panel[data-open="true"] {
  display: block;
}

.page-run-blast .tabs {
  display: flex;
  gap: 0.5rem;
  border-bottom: 1px solid #374151;
  margin-bottom: 1rem;
}

.page-run-blast .tab-btn {
  padding: 0.5rem 0.75rem;
  border: 1px solid #374151;
  border-bottom: none;
  border-top-left-radius: 0.5rem;
  border-top-right-radius: 0.5rem;
  background: #0b0b0b;
  color: #e5e7eb;
}

.page-run-blast .tab-btn[aria-selected="true"] {
  background: #1f2937;
}

.page-run-blast .tab-panel {
  display: none;
}

.page-run-blast .tab-panel[data-active="true"] {
  display: block;
}

.page-run-blast .selbar {
  display: flex;
  align-items: center;
  gap: 1rem;
  justify-content: space-between;
  padding: 0.5rem 0.75rem;
  border-bottom: 1px solid #374151;
  background: #0f172a;
}

.page-run-blast .dropdown {
  position: relative;
  display: inline-block;
}

.page-run-blast .dropdown-menu {
  display: none;
  position: absolute;
  left: 0;
  margin-top: 0.25rem;
  background: #1f2937;
  border: 1px solid #374151;
  border-radius: 0.5rem;
  min-width: 14rem;
  z-index: 50;
}

.page-run-blast .dropdown-menu.hidden {
  display: none;
}

.page-run-blast .dropdown-menu:not(.hidden) {
  display: block;
}

.page-run-blast .dropdown-menu button {
  display: block;
  width: 100%;
  text-align: left;
  padding: 0.5rem 1rem;
  color: #f9fafb;
}

.page-run-blast .dropdown-menu button:hover {
  background: #2563eb;
}

.page-run-blast #downloadMenu button {
  white-space: nowrap;
}

a.link {
  color: #3b82f6 !important;
}
a.link:hover {
  color: #60a5fa; /* blue-400 */
}

.download-menu {
  display: none;
  position: absolute;
  top: 100%; /* directly below button */
  right: 0;
  margin-top: 0.25rem;
  background: #1f2937; /* Tailwind gray-800 */
  border: 1px solid #374151; /* Tailwind gray-700 */
  border-radius: 0.5rem;
  z-index: 50;
}

.download-menu.show {
  display: block;
}

.download-menu button {
  display: block;
  width: 100%;
  text-align: left;
  padding: 0.5rem 1rem;
  color: #f9fafb;
}

.download-menu button:hover {
  background: #374151;
}

/* --- Fix dropdown menu alignment and visibility --- */
/* Fix for dropdowns being clipped inside DaisyUI navbars */
/* .navbar {
  overflow: visible !important;
  isolation: unset !important;
  z-index: 40 !important;
} */

.navbar .group button {
  display: inline-flex !important;
  align-items: center !important;
  vertical-align: middle;
}

.navbar .group .absolute {
  position: absolute !important;
  top: 100%;
  right: 0;
}

.navbar .group .absolute a {
  display: block;
  width: 100%;
}

/* Give dropdown the dark box look */
.navbar .group .absolute {
  background-color: rgb(17, 24, 39); /* gray-900 */
  color: rgb(229, 231, 235); /* gray-200 */
  border: 1px solid rgb(55, 65, 81); /* gray-700 */
  border-radius: 0.5rem;
  box-shadow: 0 4px 10px rgba(0, 0, 0, 0.4);
  z-index: 9999;
}

.navbar .group .absolute a:hover {
  background-color: rgb(55, 65, 81); /* gray-700 */
}

th.sortable {
  cursor: pointer;
  user-select: none;
  white-space: normal;
}
th.sortable .arrow {
  margin-left: 4px;
  font-size: 0.8em;
  opacity: 0.6;
}

/* Hide nav text on small screens */
@media (max-width: 768px) {
  .nav-label {
    display: none;
  }
}

/* Structure viewers: force side-by-side even if Tailwind grid utilities are missing */
#structureViewers {
  display: grid;
  grid-template-columns: 1fr 1fr;
  gap: 1rem;
}

/* On small screens, stack */
@media (max-width: 640px) {
  #structureViewers {
    grid-template-columns: 1fr;
  }
}

/* --- Shared form styles --- */
.form-label {
  display: block;
  font-size: 0.875rem;
  color: #d1d5db; /* gray-300 */
  margin-bottom: 0.25rem;
}

.form-input,
.form-select,
.form-textarea,
.form-file {
  width: 100%;
  border-radius: 0.5rem;
  padding: 0.5rem 0.75rem;
  background: #111827; /* gray-900 */
  color: #f9fafb; /* gray-50 */
  border: 1px solid #374151; /* gray-700 */
  transition: border-color 0.15s ease, box-shadow 0.15s ease;
}

.form-input::placeholder,
.form-textarea::placeholder {
  color: #9ca3af; /* gray-400 */
}

.form-input:focus,
.form-select:focus,
.form-textarea:focus,
.form-file:focus {
  outline: none;
  border-color: #2563eb; /* blue-600 */
  box-shadow: 0 0 0 2px rgba(37, 99, 235, 0.25);
}

.form-input:disabled,
.form-select:disabled,
.form-textarea:disabled,
.form-file:disabled {
  background: #1f2937; /* gray-800 */
  color: #9ca3af; /* gray-400 */
  cursor: not-allowed;
}

.form-textarea {
  min-height: 6rem;
  resize: vertical;
}

.form-file {
  padding: 0.4rem 0.75rem;
}

.form-checkbox,
.form-radio {
  accent-color: #3b82f6; /* blue-500 */
}

.form-button {
  display: inline-flex;
  align-items: center;
  justify-content: center;
  gap: 0.5rem;
  padding: 0.5rem 1rem;
  border-radius: 0.5rem;
  font-weight: 600;
  background: #2563eb; /* blue-600 */
  color: #ffffff;
  transition: background 0.15s ease, opacity 0.15s ease;
}

.form-button:hover {
  background: #1d4ed8; /* blue-700 */
}

.form-button-secondary {
  background: #374151; /* gray-700 */
  color: #ffffff;
}

.form-button-secondary:hover {
  background: #4b5563; /* gray-600 */
}

.form-button-danger {
  background: #b91c1c; /* red-700 */
  color: #ffffff;
}

.form-button-danger:hover {
  background: #991b1b; /* red-800 */
}

.form-button:disabled,
.form-button[disabled] {
  opacity: 0.6;
  cursor: not-allowed;
}